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Tags: LS49-regression-nightly cctbx-ci cctbx-docs cctbx-nightly cctbxlite-nightly dials-nightly dials-nightly-regression labelit-nightly labelit-nightly-regression mpidialsregression-nightly phenix-docs phenix-externals phenix-nightly phenix-qrefine phenix-source py3-syntax-ci syntax-ci xfel-regression-nightly
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LS49-regression-nightly cctbx-ci cctbx-docs cctbx-nightly cctbxlite-nightly dials-nightly dials-nightly-regression labelit-nightly labelit-nightly-regression mpidialsregression-nightly phenix-docs phenix-externals phenix-nightly phenix-qrefine phenix-source py3-syntax-ci syntax-ci xfel-regression-nightly
Pavel
more fixes from Billy
terwill
Fix keys for cases where chains are not identical in conformatin
Markus Gerstel
Record expected test failures as skips in xml
Otherwise builds are recorded as broken in the .xml file, but shown as
fine on the command line.
terwill
Fix keys for cases where chains are not identical in conformation; fix bug in smoothing
RBolotovsky
Simplify worker names. Use underscores instead of spaces in the names so "dispatch workers" option doesn't fail on those names.
lwhung1
Updated per Billy's comments
Billy K. Poon
wxtbx: add TX as a valid scatterer
lwhung1
Local_blast compatible with blastp
  • cctbx-ci-ci: test ALL clutter failed -  stdio
  • py3-syntax-ci-ci: Python syntax check failed -  stdio
Billy K. Poon
DataManager: automatically update default filename
- When params.output.serial is defined in the program, the number will increment by 1
- This is done if the same file type is written successively (e.g. 2 model files)
- This allows other file types to have the same number before being incremented
Billy K. Poon
DataManager: remove duplicate PHIL; add extension parameter for writing models
terwill
Fix typo
Pavel
Fix typo
Billy K. Poon
bootstrap: recognize action if provided as an argument to --use-conda
- Before, if an action (e.g. "hot" or "update") was added after the --use-conda flag, that would have been interpreted as a file or directory
- Now, the argument is used as an action
- But, directory or files with the same name as an action will not be recognized as files or directories
Billy K. Poon
Windows: mark failing tests for Python 2.7
Oleg Sobolev
ccp4 map example.
Robert Oeffner
HKLviewer GUI updates
Pavel
Bug fix to account for out of box boundaries (still need to investigate the commented out assertion)
  • cctbx-ci-ci: test ALL clutter failed -  stdio
chrissciwilliams
fixed cablam result sorting bug for segids>2char
Pavel
Fix accidental revert to older Python style
RBolotovsky
Address ExperimentListDumper deprecation warning, simplify output file names for single process.
Pavel
Fixes by XY to address assortment of bugs found running this over PDB
  • cctbx-ci-ci: test ALL clutter failed -  stdio
Robert Oeffner
HKLviewer GUI updates
Billy K. Poon
py3: mark current test failures
Pavel
Do not show overall plot -- does not make much sense.
  • cctbx-ci-ci: test ALL clutter failed -  stdio
Billy K. Poon
bugfix: do not double count failing or unstable tests
Richard Gildea
hide implementation function
Pavel Afonine
suppress output
Billy K. Poon
conda: wrap miniconda directory in quotes in case of spaces
RBolotovsky
Handle some empty array cases.
Billy K. Poon
Update test values for new map smoothing
RBolotovsky
Prevent SDFAC output unless log level is 0.
Pavel
Add end of line
chrissciwilliams
change to results sorting to support hybrid36 resseq
Markus Gerstel
trap infinite loop
chrissciwilliams
fixed results sorting to handle negative resseq
Billy K. Poon
clean clutter
Billy K. Poon
fable: mark test as unstable
Oleg Sobolev
proofing
chrissciwilliams
new sort for rama/omega validation output to handle negative resseq values
Pavel Afonine
More fixes to issues found in PDB